ABI Trace Viewer
The ABI Trace Viewer plugin will render any .ab1 sequence trace file as a pherogram, which users can scroll through directly on the notebook page to see the specific peaks for each residue in the sequence.
Clustal Alignment Viewer
The Clustal Alignment Viewer plugin will render any .aln sequence alignment file as an inline alignment, which users can scroll through directly on the notebook page to see the alignment for each position in the sequence.
(Please note: the .aln plugin is currently not working with the new version of CERF 3.5 please let us know if it's of interest to get this fixed.)
JMol Molecular Structure Viewer
The JMol Molecular Structure Viewer plugin will render a variety of molecular structure file types (including .mol and .pdb) as inline 3-D views which the user can interact with by clicking and dragging to rotate the display.
Plain Text Viewer
The Plain Text viewer will display any simple text file (.txt or .rtf) inline, so that rather than seeing a file icon for this type of file the user will see the actual contents of the file directly inline.
Genbank Sequence Viewer
The Genbank Sequence Viewer plugin will parse any Genbank sequence file (.gb or .gbk) and display it as a visual sequence map. Various elements and tracks will be parsed out and displayed, and the user can zoom in and out, with the ultimate resolution at the level of displaying the actual sequence data.
Please contact firstname.lastname@example.org if you there are other file types that you would like to see visualized directly in CERF.